Illuminating meaningful diversity in complex feature spaces through adaptive grid-based genetic algorithms

In many fields there exist problems for which multiple solutions of suitably high performance may be found across distinct regions of the search space. Optimisation of the search towards including these distinct solutions is important not only to understanding these spaces but also to avoiding local optima. This is the goal of a type of genetic algorithms called illumination algorithms. In Chapter 2, we demonstrate the use of an illumination algorithm in the exploration of networks sharing only a given set of structural features (valid networks). This method produces a population of valid networks that are more diverse than those produced using state of the art methods, however, it was found to be too inefficient to be usable in real-world problems. Additionally, setting an appropriate resolution of the search requires some amount of prior knowledge of the space of solutions. Addressing this problem is the focus of Chapter 3, in which we develop three extensions to the method: a) an exact method of mutation whereby only valid networks are explored, b) an adaptive mechanism for setting the resolution of the search, c) a principle for tuning mutations parameters to the search’ s resolution. We show that with these additions our method is able to increase the diversity of solutions found in significantly fewer iterations. Finally, in Chapter 4 we expand our method for use in more general problem spaces. We benchmark it against the state of the art. In all tested landscapes, we show that our method is able to identify more meaningful niches in the spaces in the same number of iterations. We conclude by highlighting the limits of our framework and discuss further directions

Virtual Special Issue on Catalysis at the U.S. Department of Energy’s National Laboratories

Catalysis research at the U.S. Department of Energy’s (DOE’s) National Laboratories covers a wide range of research topics in heterogeneous catalysis, homogeneous/molecular catalysis, biocatalysis, electrocatalysis, and surface science. Since much of the work at National Laboratories is funded by DOE, the research is largely focused on addressing DOE’s mission to ensure America’s security and prosperity by addressing its energy, environmental, and nuclear challenges through transformative science and technology solutions. The catalysis research carried out at the DOE National Laboratories ranges from very fundamental catalysis science, funded by DOE’s Office of Basic Energy Sciences (BES), to applied research and development (R&D) in areas such as biomass conversion to fuels and chemicals, fuel cells, and vehicle emission control with primary funding from DOE’s Office of Energy Efficiency and Renewable Energy. National Laboratories are home to many DOE Office of Science national scientific user facilities that provide researchers with the most advanced tools of modern science, including accelerators, colliders, supercomputers, light sources, and neutron sources, as well as facilities for studying the nanoworld and the terrestrial environment. National Laboratory research programs typically feature teams of researchers working closely together, often joining scientists from different disciplines to tackle scientific and technical problems using a variety of tools and techniques available at the DOE national scientific user facilities. Along with collaboration between National Laboratory scientists, interactions with university colleagues are common in National Laboratory catalysis R&D. In some cases, scientists have joint appointments at a university and a National Laboratory. This ACS Catalysis Virtual Special Issue {http://pubs.acs.org/page/accacs/vi/doe-national-labs} was motivated by Christopher Jones and Rhea Williams, who sent out the invitations to all of DOE’s National Laboratories where catalysis research is conducted. All manuscripts submitted went through the standard rigorous peer review required for publication in ACS Catalysis. A total of 29 papers are published in this virtual special issue, which features some of the recent catalysis research at 11 of DOE’s National Laboratories: Ames Laboratory (Ames), Argonne National Laboratory (ANL), Brookhaven National Laboratory (BNL), Lawrence Berkeley National Laboratory (LBNL), Lawrence Livermore National Laboratory (LLNL), National Energy Technology Laboratory (NETL), National Renewable Energy Laboratory (NREL), Oak Ridge National Laboratory (ORNL), Pacific Northwest National Laboratory (PNNL), Sandia National Laboratory (SNL), and SLAC National Accelerator Laboratory (SLAC). In this preface, we briefly discuss the history and impact of catalysis research at these particular DOE National Laboratories, where the majority of catalysis research continues to be conducted

Virtual Special Issue on Catalysis at the U.S. Department of Energy’s National Laboratories

Catalysis research at the U.S. Department of Energy’s (DOE’s) National Laboratories covers a wide range of research topics in heterogeneous catalysis, homogeneous/molecular catalysis, biocatalysis, electrocatalysis, and surface science. Since much of the work at National Laboratories is funded by DOE, the research is largely focused on addressing DOE’s mission to ensure America’s security and prosperity by addressing its energy, environmental, and nuclear challenges through transformative science and technology solutions. The catalysis research carried out at the DOE National Laboratories ranges from very fundamental catalysis science, funded by DOE’s Office of Basic Energy Sciences (BES), to applied research and development (R&D) in areas such as biomass conversion to fuels and chemicals, fuel cells, and vehicle emission control with primary funding from DOE’s Office of Energy Efficiency and Renewable Energy. National Laboratories are home to many DOE Office of Science national scientific user facilities that provide researchers with the most advanced tools of modern science, including accelerators, colliders, supercomputers, light sources, and neutron sources, as well as facilities for studying the nanoworld and the terrestrial environment. National Laboratory research programs typically feature teams of researchers working closely together, often joining scientists from different disciplines to tackle scientific and technical problems using a variety of tools and techniques available at the DOE national scientific user facilities. Along with collaboration between National Laboratory scientists, interactions with university colleagues are common in National Laboratory catalysis R&D. In some cases, scientists have joint appointments at a university and a National Laboratory. This ACS Catalysis Virtual Special Issue {http://pubs.acs.org/page/accacs/vi/doe-national-labs} was motivated by Christopher Jones and Rhea Williams, who sent out the invitations to all of DOE’s National Laboratories where catalysis research is conducted. All manuscripts submitted went through the standard rigorous peer review required for publication in ACS Catalysis. A total of 29 papers are published in this virtual special issue, which features some of the recent catalysis research at 11 of DOE’s National Laboratories: Ames Laboratory (Ames), Argonne National Laboratory (ANL), Brookhaven National Laboratory (BNL), Lawrence Berkeley National Laboratory (LBNL), Lawrence Livermore National Laboratory (LLNL), National Energy Technology Laboratory (NETL), National Renewable Energy Laboratory (NREL), Oak Ridge National Laboratory (ORNL), Pacific Northwest National Laboratory (PNNL), Sandia National Laboratory (SNL), and SLAC National Accelerator Laboratory (SLAC). In this preface, we briefly discuss the history and impact of catalysis research at these particular DOE National Laboratories, where the majority of catalysis research continues to be conducted.This document is the Accepted Manuscript version of a Published Work that appeared in final form in ACS Catalysis, copyright © American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see DOI: 10.1021/acscatal.6b00823. Posted with permission.</p